Applied palaeontology in the Chalk Group: quality control for geological mapping and modelling and revealing new understanding

The Chalk is a major aquifer, source of raw material for cement and agricultural lime, and a host geological unit for major civil engineering projects. Detailed understanding of its development and lateral variation is significant for our prosperity and for understanding the potential risks of pollution and groundwater flooding, and in this aspect palaeontology plays a central part. Historically, the distribution of macrofossils offered important refinement to the simple three-fold subdivision of the Chalk based on lithological criteria. In recent decades, the advent of a more sophisticated lithostratigraphy for the Chalk, more closely linked to variations in its physical properties, provided an impetus for the British Geological Survey to depict this on its geological maps. Tracing Chalk stratigraphical units away from the well-exposed successions on which the new stratigraphy is based requires subtle interpretation of landscape features, and raises the need for methods of ensuring that the interpretations are correct. New and archived palaeontological data from the vast BGS collections, interpreted as a component of a broad-based holostratigraphical scheme for the Chalk, and spatially analysed using modern Geographical Information Systems (GIS) and landscape visualisation technology, helps fulfil this need. The value of palaeontological data in the Chalk has been boosted by the work that underpins the new lithostratigraphy; it has revealed broad patterns of biofacies based on a range of taxa that is far more diverse than those traditionally used for biostratigraphy, and has provided a detailed reference framework of marker-beds so that fossil ranges can be better understood. In the subsurface, biofacies data in conjunction with lithological and geophysical data, has been used to interpret and extrapolate the distribution of Chalk formations in boreholes across southern England, allowing development of sophisticated three-dimensional models of the Chalk; revealing the influence of ancient structures on Chalk depositional architecture, and pointing to palaeoenvironmental factors that locally affected productivity of Chalk in Late Cretaceous oceans

Chandra localization of XTE J1906+090 and discovery of its optical and infrared counterparts

We present the Chandra identification and localization of the transient X-ray source XTE J1906+090 and the discovery of its optical and infrared counterparts. Our analysis of archival Chandra ACIS-I observations of the field found the source approximately 8 away from the position determined earlier with the RXTE PCA. We have confirmed the source identification with timing analysis of the X-ray data, which detected the source spin period of 89.6 s. The best Chandra position for the source is R.A. = 19h04m47491, decl. = +09024140. Subsequently, we performed optical observations of the field around the new location and discovered a coincident optical source with R-band magnitude of 18.7. A search in the Two Micron All Sky Survey catalog revealed an infrared point source with J = 15.2, H = 14.2, and K = 13.5, whose location is also coincident with our Chandra and optical positions. Our results add fresh evidence for a Be/X-ray transient nature for XTE J1906+090

The Prelude to and Aftermath of the Giant Flare of 2004 December 27: Persistent and Pulsed X-ray Properties of SGR 1806-20 from 1993 to 2005

On 2004 December 27, a highly-energetic giant flare was recorded from the magnetar candidate SGR 1806-20. In the months preceding this flare, the persistent X-ray emission from this object began to undergo significant changes. Here, we report on the evolution of key spectral and temporal parameters prior to and following this giant flare. Using the Rossi X-ray Timing Explorer, we track the pulse frequency of SGR 1806-20 and find that the spin-down rate of this SGR varied erratically in the months before and after the flare. Contrary to the giant flare in SGR 1900+14, we find no evidence for a discrete jump in spin frequency at the time of the December 27th flare (|dnu/nu| < 5 X 10^-6). In the months surrounding the flare, we find a strong correlation between pulsed flux and torque consistent with the model for magnetar magnetosphere electrodynamics proposed by Thompson, Lyutikov & Kulkarni (2002). As with the flare in SGR 1900+14, the pulse morphology of SGR 1806-20 changes drastically following the flare. Using the Chandra X-ray Observatory and other publicly available imaging X-ray detector observations, we construct a spectral history of SGR 1806-20 from 1993 to 2005. The usual magnetar persistent emission spectral model of a power-law plus a blackbody provides an excellent fit to the data. We confirm the earlier finding by Mereghetti et al. (2005) of increasing spectral hardness of SGR 1806-20 between 1993 and 2004. Contrary to the direct correlation between torque and spectral hardness proposed by Mereghetti et al., we find evidence for a sudden torque change that triggered a gradual hardening of the energy spectrum on a timescale of years. Interestingly, the spectral hardness, spin-down rate, pulsed, and phase-averaged of SGR 1806-20 all peak months before the flare epoch.Comment: 37 pages, 8 figures, 8 tables. Accepted for publication in ApJ. To appear in the Oct 20 2006 editio

Spin-orbit enhancement in Si/SiGe heterostructures with oscillating Ge concentration

We show that Ge concentration oscillations within the quantum well region of a Si/SiGe heterostructure can significantly enhance the spin-orbit coupling of the low-energy conduction-band valleys. Specifically, we find that for Ge oscillation wavelengths near $\lambda = 1.57~\text{nm}$, a Dresselhaus spin-orbit coupling is produced that is over an order of magnitude larger than what is found in conventional Si/SiGe heterostructures without Ge concentration oscillations. We also provide a detailed explanation for this resonance phenomenon. This involves the Ge concentration oscillations producing wavefunction satellite peaks a distance $2 \pi/\lambda$ away in momentum space from each valley, which then couple to the opposite valley through Dresselhaus spin-orbit coupling. Our results indicate that the enhanced spin-orbit coupling can enable fast spin manipulation within Si quantum dots using electric dipole spin resonance in the absence of micromagnets. Indeed, our calculations yield a Rabi frequency $\Omega_{\text{Rabi}}/B > 500~\text{MHz/T}$ near the optimal Ge oscillation wavelength $\lambda = 1.57~\text{nm}$Comment: 18 pages, 11 figure

Complex response of dinoflagellate cyst distribution patterns to cooler early Oligocene oceans

Previous studies have made extensive use of dinoflagellate cysts to reconstruct past sea surface temperature (SST). Analysis of associations of dinoflagellate cysts using two new ocean datasets for the mid Eocene (Bartonian) and early Oligocene (Rupelian) reveals clear latitudinally constrained distributions for the Bartonian, but unexpected changes in their Rupelian distribution; a significant number of species with low and mid latitude northern hemisphere occurrences in the Bartonian extend their northward ranges in the Rupelian, including some forms characterised as ‘warm water’ by previous studies. This suggests either that dinoflagellates are faithfully tracking a complex oceanographic response to Rupelian cooling, or that dinoflagellate sensitivity/adaptability to a range of ecological variables means that at a global scale their distributions are not primarily controlled by sea surface temperature-variability. Previous use of dinoflagellate cysts for palaeoclimate work has relied on rather subjective and inconsistent identification of ‘warm’ and ‘cold’ water forms, rather than comprehensive analysis of community associations at the global-scale. It is clear from this study that a better understanding of the (palaeo-)ecology of dinoflagellates and their cysts is required. Rupelian dinoflagellate cyst distribution may reflect changes in a range of environmental variables linked to early Oligocene climate-cooling, for example changes in nutrient fluxes triggered by glacially-induced base-level fall; complex reorganisation of ocean current systems between the Bartonian and Rupelian, or muted changes to Rupelian summer SSTs in the northern hemisphere that have previously been reported. Many extant dinoflagellate species also exhibit relatively broad temperature tolerance. Moreover, they have potentially extensive cryptic diversity, and are able to produce dormant cysts during short-lived environmental deterioration, all of which may act to limit the value of undifferentiated dinoflagellate cyst assemblages for identifying climate signals

Hearing Loss and Retarded Cochlear Development in Mice Lacking Type 2 Iodothyronine Deiodinase

The later stages of cochlear differentiation and the developmental onset of hearing require thyroid hormone. Although thyroid hormone receptors (TRs) are a prerequisite for this process, it is likely that other factors modify TR activity during cochlear development. The mouse cochlea expresses type 2 deiodinase (D2), an enzyme that converts thyroxine, the main form of thyroid hormone in the circulation, into 3,5,3\u27-triiodothyronine (T3) the major ligand for TRs. Here, we show that D2-deficient mice have circulating thyroid hormone levels that would normally be adequate to allow hearing to develop but they exhibit an auditory phenotype similar to that caused by systemic hypothyroidism or TR deletions. D2-deficient mice have defective auditory function, retarded differentiation of the cochlear inner sulcus and sensory epithelium, and deformity of the tectorial membrane. The similarity of this phenotype to that caused by TR deletions suggests that D2 controls the T3 signal that activates TRs in the cochlea. Thus, D2 is essential for hearing, and the results suggest that this hormone-activating enzyme confers on the cochlea the ability to stimulate its own T3 response at a critical developmental period

The Geology of England – critical examples of Earth History – an overview

Over the past one billion years, England has experienced a remarkable geological journey. At times it has formed part of ancient volcanic island arcs, mountain ranges and arid deserts; lain beneath deep oceans, shallow tropical seas, extensive coal swamps and vast ice sheets; been inhabited by the earliest complex life forms, dinosaurs, and finally, witnessed the evolution of humans to a level where they now utilise and change the natural environment to meet their societal and economic needs. Evidence of this journey is recorded in the landscape and the rocks and sediments beneath our feet, and this article provides an overview of these events and the themed contributions to this Special Issue of Proceedings of the Geologists’ Association, which focuses on ‘The Geology of England – critical examples of Earth History’. Rather than being a stratigraphic account of English geology, this paper and the Special Issue attempts to place the Geology of England within the broader context of key ‘shifts’ and ‘tipping points’ that have occurred during Earth History

A compact coastal ocean observing system for Kernel Blitz 2001

In this report we describe a compact, easily deployed, moored system for oceanographic and meteorological observations in the coastal ocean. The system consists of a surface and subsurface mooring pair deployed adjacent to one another. Compared to a single catenary surface mooring, this arrangement allows the entire water column to be instrumented. All of the instruments in the system log high resolution time series data. Additionally, the mooring line instruments periodically report averaged data to the buoys via inductive modems. On the subsurface mooring, this averaged data is sent to the surface buoy using an acoustic modem. Inductively coupled mooring line instrumentation includes conductivity, temperature, and pressure sensors, acoustic current meters, and optical backscattering and absorption sensors. In addition to mooring line instruments, the surface buoy collects averaged data from meteorological sensors, including wind speed and direction, barometric pressure, relative humidity, air temperature, precipitation, longwave and shortwave radiation, sea surface temperature and conductivity, and wave height and period. Data from both mooring lines and from the surface meteorological sensors is telemetered to shore via line-of-sight radio and satellite. The entire system, including buoys, moorings, instruments, launch and recovery gear, telemetry receive, and data processing facilities can be packed into a single 20 foot shipping container. The system was successfully deployed to provide environmental monitoring for Kernel Blitz 2001, a US Navy fleet exercise off southern California. Results from the deployment are presented.Funding was provided by the Office of Naval Research under Contract Number N000149910090

Assessing sampling of the fossil record in a geographically and stratigraphically constrained dataset: the Chalk Group of Hampshire, southern UK

Taphonomic, geological and sampling processes have been cited as biasing richness measurements in the fossil record, and sampling proxies have been widely used to assess this. However, the link between sampling and taxonomic richness is poorly understood, and there has been much debate on the equivalence and relevance of proxies. We approach this question by combining both historical and novel data: a historical fossil occurrence dataset with uniquely high spatial resolution from the Upper Cretaceous Chalk Group of Hampshire, UK, and a newly compiled 3D geological model that maps subsurface extent. The geological model provides rock volumes, and these are compared with exposure and outcrop area, sampling proxies that have often been conflated in previous studies. The extent to which exposure area (true rock availability) has changed over research time is also tested. We find a trend of low Cenomanian to high Turonian to Campanian raw richness, which correlates with, and is possibly driven by, the number of specimens found. After sampling standardization, an unexpected mid-Turonian peak diversity is recovered, and sampling-standardized genus richness is best predicted by rock volume, suggesting a species–area (or ‘genus–area’) effect. Additionally, total exposure area has changed over time, but relative exposure remains the same. Supplementary materials: A locality list, abundance matrix and all correlation and modelling results are available at https://doi.org/10.6084/m9.figshare.c.3592208

Cosmic cookery : making a stereoscopic 3D animated movie.

This paper describes our experience making a short stereoscopic movie visualizing the development of structure in the universe during the 13.7 billion years from the Big Bang to the present day. Aimed at a general audience for the Royal Society's 2005 Summer Science Exhibition, the movie illustrates how the latest cosmological theories based on dark matter and dark energy are capable of producing structures as complex as spiral galaxies and allows the viewer to directly compare observations from the real universe with theoretical results. 3D is an inherent feature of the cosmology data sets and stereoscopic visualization provides a natural way to present the images to the viewer, in addition to allowing researchers to visualize these vast, complex data sets. The presentation of the movie used passive, linearly polarized projection onto a 2m wide screen but it was also required to playback on a Sharp RD3D display and in anaglyph projection at venues without dedicated stereoscopic display equipment. Additionally lenticular prints were made from key images in the movie. We discuss the following technical challenges during the stereoscopic production process; 1) Controlling the depth presentation, 2) Editing the stereoscopic sequences, 3) Generating compressed movies in display speci¯c formats. We conclude that the generation of high quality stereoscopic movie content using desktop tools and equipment is feasible. This does require careful quality control and manual intervention but we believe these overheads are worthwhile when presenting inherently 3D data as the result is signi¯cantly increased impact and better understanding of complex 3D scenes